In February , GenBank/EMBL/DDBJ implemented a new " konzol.infon " system of sequence identifiers that runs parallel to the gi number system. This list of accession number prefixes should be used as a guide. For instance, there are ESTs and GSSs from GenBank that have the prefix for Direct. GenBank is part of the International Nucleotide Sequence Database Collaboration, which comprises the DNA DataBank of Japan (DDBJ), the European Nucleotide Archive (ENA), and GenBank at NCBI. These three organizations exchange data on a daily basis. Sequence IDs - How to submit data to GenBank - GenBank: BankIt - Sample Record.
KR A/ SYSTEM FOR PRESENTING PEPTIDES ON THE CELL SURFACE bp linear other-genetic LY GI 2. The GI number is simply a series of digits assigned consecutively to sequences submitted to NCBI. Version number suffix: GenBank sequence identifiers consist of an accession number of the record followed by a dot and a version number (i.e. konzol.infon). You can now simply match the genBank accession in your data with the genBank accession ids x = listAttributes(ensembl) x[grep("Genbank", x$description),].
I want to download HIV-1 env sequences from NCBI using Accession number of these sequences. For that I was using 'Batch Entrez', but to my surprise. An accession number in bioinformatics is a unique identifier given to a DNA or protein sequence record to allow for tracking of different versions of that sequence. However - the Green Genes database (at konzol.info downloads) gives me a Genbank Accession Number, like this. Hi Ed, Hypothetically you would want to use the konzol.info package. However, not all GenBank assession numbers will be annotated, presumably because.